GgaEX1013180 @ galGal3
Exon Skipping
Gene
ENSGALG00000002613 | CCBE1
Description
NA
Coordinates
chrZ:8648921-8654328:-
Coord C1 exon
chrZ:8654317-8654328
Coord A exon
chrZ:8654078-8654184
Coord C2 exon
chrZ:8648921-8649041
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGGAAACTGCTTTCTTTCAGCTG
3' ss Score
7.42
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
GCATTAATAATG
Seq A exon
CTGGACTTTCTGAGAAATCTGAAAACGTGGCGAAACCAGGGACATGCTGTGCCTCTTGTAAGGAATTTCATCAAATAAAGCAGACAGTTTTGCAACTGAAGCAAAAG
Seq C2 exon
GTTTCTTTGCTACCAAATAATGCTGCTGATCTTAGCAAGCAAATCACTGGTGAAAAAGTGCTTGCATCTAATGCATATATCCCCGGCCCCCCAGGACAGCCTGGCCAACAAGGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002613-'3-4,'3-3,4-4=AN
Average complexity
A_C3
Mappability confidence:
75%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.278 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(28.6=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]