GgaEX1013180 @ galGal4
Exon Skipping
Gene
ENSGALG00000027785 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chrZ:9166747-9176533:-
Coord C1 exon
chrZ:9176396-9176533
Coord A exon
chrZ:9171904-9172010
Coord C2 exon
chrZ:9166747-9166867
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGGAAACTGCTTTCTTTCAGCTG
3' ss Score
7.42
5' ss Seq
AAGGTACGA
5' ss Score
9.78
Exon sequences
Seq C1 exon
ACATTGACGAGTGTGCCGCCAGCAATGGGACGCTGTGCTCGCACATCTGCATCAACACCGTGGGCAGCTACAGGTGTGAGTGCCACGAAGGCTACACCCGGGGGGAGGACGGCAGGACGTGCACCAAGGGAGATAAAG
Seq A exon
CTGGACTTTCTGAGAAATCTGAAAACGTGGCGAAACCAGGGACATGCTGTGCCTCTTGTAAGGAATTTCATCAAATAAAGCAGACAGTTTTGCAACTGAAGCAAAAG
Seq C2 exon
GTTTCTTTGCTACCAAATAATGCTGCTGATCTTAGCAAGCAAATCACTGGTGAAAAAGTGCTTGCATCTAATGCATATATCCCCGGCCCCCCAGGACAGCCTGGCCAACAAGGTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027785-'10-13,'10-12,11-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=0.139 C2=0.748
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=6.4),PF146701=FXa_inhibition=WD(100=78.7)
A:
NO
C2:
PF0139113=Collagen=PU(28.6=34.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGACGAGTGTGCCGC
R:
TGGAGGACCTTGTTGGCCAG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]