RnoEX0002349 @ rn6
Exon Skipping
Gene
ENSRNOG00000024536 | AABR07032338.1
Description
NA
Coordinates
chr18:61765042-61787207:-
Coord C1 exon
chr18:61787055-61787207
Coord A exon
chr18:61771925-61772028
Coord C2 exon
chr18:61765042-61765162
Length
104 bp
Sequences
Splice sites
3' ss Seq
GATCCTATCTCCTTTCCCAGGGC
3' ss Score
9.27
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATATCGATGAGTGTGCCACCGGCAACACCACTCTGTGTGCACATACCTGCGTCAACACCATGGGCAGCTACCACTGTGAGTGTCGGGAGGGCTACATCCTTGAGGACGATGGGAGGACCTGCACGAGGGGAGACAAATACCCCAATGACACTG
Seq A exon
GGCATGAGGAGAAGTCCGAGAATGAGGTGAAAGCTGGGACCTGCTGTGCCACATGCAAGGAGTTCTCCCAGATGAAGCAGACGGTGCTGCAGCTGAAGCAGAAG
Seq C2 exon
ATTTCTCTGCTCCCCAACAATGCCGCCGAACTGGGCAAGTATGTCAATGGTGACAAGGTGCTGGCCTCGAACACCTATCTTCCAGGACCTCCTGGCCTGCCTGGGGGACAGGGCCCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024536_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.314 C2=0.768
Domain overlap (PFAM):
C1:
PF126622=cEGF=PD(10.7=5.8),PF146701=FXa_inhibition=WD(100=71.2)
A:
NO
C2:
PF0139113=Collagen=PU(28.6=34.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATCGATGAGTGTGCCACCG
R:
GGAGGTCCTGGAAGATAGGTGT
Band lengths:
245-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]