BtaEX0007288 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008723 | CCBE1
Description
collagen and calcium binding EGF domains 1 [Source:HGNC Symbol;Acc:HGNC:29426]
Coordinates
chr24:58892817-58912244:-
Coord C1 exon
chr24:58912092-58912244
Coord A exon
chr24:58901204-58901310
Coord C2 exon
chr24:58892817-58892937
Length
107 bp
Sequences
Splice sites
3' ss Seq
GAGTCCGTCTCTCCCTGCAGGGC
3' ss Score
10.94
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
ATATCGATGAATGCGCCACGAGCAACGAGACGCTGTGCGCGCACATCTGCGTCAACACCGTGGGCAGCTACCGCTGTGAGTGCCGGGAGGGCTACGTCCAAGAGGAAGACGGCAGGACGTGCACCAAGGAAGACAAGTACCCCAATGACACTG
Seq A exon
GGCACGACGACGAGAAGGTGGAGAACGCGGTCCGAGCCGCCACCTGCTGTGCCACGTGCAAGGAGTTGCACCAGGTGAAGCAGACGGTGCTGCAGCTGAAGCAGAAG
Seq C2 exon
GTTGCCCTGCTCCCCAACAGCGCTGCCGACCTGGGCAAGTACATCACTGGTCACAAGGCACTGGCCTCAAACGCCTACCTTCCAGGTCCTCCTGGCCTGCCTGGGGGCCAGGGCCCCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008723_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.333 C2=0.683
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=78.8)
A:
NO
C2:
PF0139113=Collagen=PU(31.4=39.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCGATGAATGCGCCACGAG
R:
CAGGCAGGCCAGGAGGAC
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development