MmuEX6004205 @ mm9
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48434825-48436459:+
Coord C1 exon
chr6:48434825-48435024
Coord A exon
chr6:48435313-48435479
Coord C2 exon
chr6:48436299-48436459
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGACTCCAGTGTTGTTTCAGAGA
3' ss Score
4.28
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACCTGTGTGGCAGGTATCCTGCAATGCCATGAGGTGCCCAGCTGCCCTGGTCCTGGGATATGGAGTTCCTGGGGGCCCTGGGAGAAATGCAGTGTTTCCTGTGGGGGAGGGGAGCAGCTACGGTCCAGGCAATGTGCCCGACCCCCCTGCCCTGGACTGGCTCAGCAGAGCCGAATTTGTCACATCCATGTCTGCAGAG
Seq A exon
AGACAGGCTGCCCAGCAGGTCGACTATACCGGGAATGCCAGCCCAGTGATGGGTGCCCCTTCTCCTGTGCTCATGTCACCGGACAGGTGGCCTGCTTCTCTGAGCGCTGTAAGGAGGGGTGTCACTGTCCAGAGGGCACCTTTCAGCATCACGTGGCCTGTGTCCAG
Seq C2 exon
GAGTGCCCCTGTGTGTTGACAGTCCTGCTGCTGCAGGAGCTGGGGTTGGCTAGCGCTGCCCTCGGATCCTATCCAACCCTTCTGGGAGATGAGGGCAAGCCCCTTGGACCTGGAGTTGAGCTGCTCCCAGGCCAGATGCTTCAAACAGACTGTGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'77-78,'77-76,78-78=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=64.7)
A:
PF0182612=TIL=PU(91.2=92.9)
C2:
PF0182612=TIL=PD(5.3=5.6),PF053758=Pacifastin_I=PU(36.4=22.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGTCCTGGGATATGGAG
R:
TTGCCCTCATCTCCCAGAAGG
Band lengths:
253-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: