BtaEX0034654 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113475291-113476701:+
Coord C1 exon
chr4:113475291-113475490
Coord A exon
chr4:113475820-113475986
Coord C2 exon
chr4:113476541-113476701
Length
167 bp
Sequences
Splice sites
3' ss Seq
CACTTGAGGGTTCCCTTCAGAGG
3' ss Score
2.08
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
Exon sequences
Seq C1 exon
CACCTGTGTGGCAGGCATCCTTCAGTGCCAGGAGGTGCCCGCCTGCTCAAGGCTGGGGCTGTGGGGCTCCTGGGGCCCCTGGGAGGACTGCAGCGTCTCCTGTGGTGGAGGGGAGCAGCTGCGCTCCCGCCGTTGCCCGCGCCCCCCCTGCCCCGGGCCTGCCCGCCAGAGCCGCACCTGCCGCACCCAGGTCTGCAGAG
Seq A exon
AGGCAGGCTGCCCGGCTGGGCGTCTGTACCGTGAATGTCAGCCCAGCGAAGGGTGCCCCTTCTCCTGCGCCCACGTCACGGGGCAGGTGGGCTGCTTCTCCGCTGGCTGCGAGGAGGGCTGTCACTGCCCCGAGGGCACCTTCCTGCACCGTTCGGCCTGTGTCCAG
Seq C2 exon
GAGTGCCCCTGTGTGCTCACCGCCTTGTGGCTGCAGGGGCTAGGAGCTGCCGGCGCTGACCCGGGGGCTCACCTGTCTGTTCTGGGAGAAAACGGTCAGCCTCTTGGGCCTGGCGATGAGTTGGGCTCGGGTCAGAGCCTCCGTACAGGCTGTCACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'88-86,'88-85,89-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.315
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(91.8=66.2)
A:
PF0009014=TSP_1=PD(6.1=5.4),PF0182612=TIL=PU(91.2=92.9)
C2:
PF0182612=TIL=PD(5.3=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCAGCGTCTCCTGTG
R:
CTGACCCGAGCCCAACTCATC
Band lengths:
250-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development