DreEX6096585 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40237777-40239568:+
Coord C1 exon
chr24:40237777-40237866
Coord A exon
chr24:40239066-40239232
Coord C2 exon
chr24:40239423-40239568
Length
167 bp
Sequences
Splice sites
3' ss Seq
GGGCTTGTGTGTGTGTTCAGAGG
3' ss Score
5.67
5' ss Seq
TCTGTGAGC
5' ss Score
3.27
Exon sequences
Seq C1 exon
GCTCTCAGAGCCGCAGTCGTTCCTGTTCCACACCTCCATGTTTAGGAAAGAGACGGCAGAGCAAGACCTGTAACACACAAGTGTGTCTGG
Seq A exon
AGGTGGGCTGTCCTCCCGGGCGTCTGTACCGTGAGTGTGAGCATGGCGAGGGCTGTCCGTTCAGCTGTTCTCAGGTCAGTGGTCTGGAGGGCTGTTATTCAGAGGGCTGTGATGAAGGCTGCCACTGTCCACCAAACACCTTCCAGCACAACGGATCCTGCGTCTCT
Seq C2 exon
GAATGTCCGTGTGTGGTGGACTCTGACCTCTTGACCTCTCTACAAAGTGTGTTGGAGACCCCTGATGTGACCTTTGACATCCACAACATCACACTAGGCTCAGAGCTGATGTCCGGAGAGGAGCTCATGCTGGAGTGCAGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'77-82,'77-81,78-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(62.2=90.3)
A:
PF0182612=TIL=PU(91.2=92.9)
C2:
PF0182612=TIL=PD(5.3=6.1),PF053758=Pacifastin_I=PU(35.3=24.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGAGCCGCAGTCGTTC
R:
CTGCACTCCAGCATGAGC
Band lengths:
227-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]