RnoEX6013467 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78117932-78119591:+
Coord C1 exon
chr4:78117932-78118131
Coord A exon
chr4:78118422-78118588
Coord C2 exon
chr4:78119431-78119591
Length
167 bp
Sequences
Splice sites
3' ss Seq
TGACTTCTGTGTTGTCTCAGAGA
3' ss Score
8.69
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CACCTGTGTGGCAGGTGTCCTGCAGTGTCATGAGGTGCCCAGCTGCCCTGGTCCTGGAATATGGAGCTCCTGGGGACCCTGGGAGAAATGTAGTGTCCCCTGTGGGGGAGGTGAGCAGCTACGGTCCAGGCAATGTGCTCGACCCCCCTGCCCTGGCCTGGCTCAGCAGAGCCGAACTTGCCATATCCATGTCTGCAGAG
Seq A exon
AGACAGGCTGCCCAGCGGGCCGACTCTACCGGGAATGCCAGCCCAGCGAGGGGTGCCCCTTCTCTTGTGCTCATGTCACCGGACAGGTGGCCTGCTTCTCTGAGAGCTGTGAGGAGGGGTGTCACTGTCCAGAGGGCACTTTTCAGCACCACTCGGCCTGTGTACAG
Seq C2 exon
GAGTGCCCCTGTGTGTTGACGGTCTCGCTGCTGCAGGAGCTGGGGGTGGCTAGCACTGCCCTCAGATCCTATCCAGTCCTTCTGGGAGATGAAGGCCAGCCCCTTGGACCTGGAGATGAGCTGGACCCAGGCCAGATGCTTCAAACAGTCTGTGGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'78-82,'78-81,79-82=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=64.7)
A:
PF0182612=TIL=PU(91.2=92.9)
C2:
PF0182612=TIL=PD(5.3=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCAGTGTCATGAGGTG
R:
AGGATCTGAGGGCAGTGCTAG
Band lengths:
254-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]