MmuEX6004236 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48464789-48465786:+
Coord C1 exon
chr6:48464789-48464939
Coord A exon
chr6:48465455-48465608
Coord C2 exon
chr6:48465732-48465786
Length
154 bp
Sequences
Splice sites
3' ss Seq
AACCATGTCTCCCTTCCCAGGTG
3' ss Score
10.31
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGGATTGTGGCTGGTCTTCCTGGTCCCCTTGGGCAGAGTGCCTGGGTCCCTGCAGCAGCCAGAGCCTCCAGTGGTCTTTTCGGAGCCCTAACAACCCACGCCTCTCTGGGCACGGTCGCCAGTGCCGTGGCATCCACCGCAAAGCCCGCAG
Seq A exon
GTGCCAGACAGAGGCCTGTGAGGGCTGTGAACAGTGGGGCCTCATGTACAATGTCGGGGAACGCTGGCGTGGGGGCCCCTGCATGGTGTGCGAGTGTCTACACAGCAGTATCACACATTGCTCCCCCTATTGCCCAATAGGCAGCTGTCCCCAG
Seq C2 exon
GGCTGGGTCCTGGTGGAAGGGATGGGAGAATCATGTTGCCACTGTGCGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'41-41,'41-38,42-41=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(72.4=80.8)
C2:
PF0009313=VWC=PD(24.1=73.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGTGGCTGGTCTTCCTG
R:
GCAGCGCACAGTGGCAAC
Band lengths:
202-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types