HsaEX0061897 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149489667-149490708:+
Coord C1 exon
chr7:149489667-149489817
Coord A exon
chr7:149490398-149490551
Coord C2 exon
chr7:149490654-149490708
Length
154 bp
Sequences
Splice sites
3' ss Seq
GGACATCCCTCCCTTCTCAGGTG
3' ss Score
8.71
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGGACTGTGGCTGGTCCTCCTGGTCACCCTGGGCCAAGTGCCTGGGCCCCTGTGGAAGCCAGAGCATCCAGTGGTCCTTCCGGAGCTCCAACAACCCCCGCCCCTCCGGCCGAGGTCGCCAGTGCCGTGGCATCCACCGCAAGGCACGCAG
Seq A exon
GTGCCAGACGGAGCCCTGTGAGGGGTGTGAGCATCAGGGCCAGGTCCACCGTGTCGGGGAACGCTGGCATGGGGGCCCCTGCAGGGTGTGCCAGTGTCTGCACAACCTCACCGCACACTGCTCACCCTACTGCCCGCTCGGCAGCTGCCCCCAG
Seq C2 exon
GGCTGGGTCTTGGTGGAGGGGACGGGAGAATCATGCTGCCACTGTGCCCTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTGGCTGGTCCTCCT
R:
AGGTAGGGCACAGTGGCAG
Band lengths:
203-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)