GgaEX6017996 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:420510-421102:+
Coord C1 exon
chr2:420510-420660
Coord A exon
chr2:420781-420940
Coord C2 exon
chr2:421048-421102
Length
160 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTCTCCTCTCGCAGGTG
3' ss Score
11.94
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGAGCTGCAGCTGGTCCGCCTGGTCACCCTGGGGTGAATGTCTGGGGCCCTGCGGCGTGCAGAGCATCCAGTGGTCCTTCCGCAGCCCCAGCCACCCCGGCAAGCACGGCACCAACCGGCAGTGCCGCGGCATCTACCGCAAGGCACGCAG
Seq A exon
GTGCCAGACGGAGCCGTGCCAGGAGTGTGAGCACCAGGGCCGGAGCCGTGCGCAGGGGGATCGCTGGCGCTGGGGGCCCTGCCATGTCTGCCAGTGCCTGCCTGGCCCTGAGGTGCGCTGCTCGCCATACTGCGCCCGCAGCGCCGTGGGCTGCCCACAG
Seq C2 exon
GGCCAGGTGCTGGTGGAGGGAAAGGGGGATTCCTGCTGCTTCTGTGCACAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'38-39,'38-38,39-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTGGTCCGCCTGGTC
R:
TGTGCACAGAAGCAGCAGGAA
Band lengths:
194-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]