BtaEX6029416 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113455123-113456209:+
Coord C1 exon
chr4:113455123-113455273
Coord A exon
chr4:113455849-113456002
Coord C2 exon
chr4:113456155-113456209
Length
154 bp
Sequences
Splice sites
3' ss Seq
GGGGTGGCCCCCCTTCCCAGGTG
3' ss Score
7.65
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TGAACTGCGGCTGGTCAGCGTGGTCCCCCTGGGCTGAGTGCCTGGGCCCCTGTGGCAGCCGGAGCGTCCAGTGGTCCTTCCGGAGCCCCAACAACCCCCGCCCGGCCGGTCGAGGGCACCAGTGCCGGGGCCTCCACCGCAAGGCCCGCAG
Seq A exon
GTGCCAGACAGAGCCCTGTGAAGGCTGCGAGCAGGACGGCCGGGTCCACCGCGTGGGGGAGCGCTGGCGAGCGGGCCCCTGCAGGGTCTGCCAGTGTCTGCACGACGGCTCGGCACGCTGCTCCCCCTACTGCCCACTGGGCAGCTGCCCCCAG
Seq C2 exon
GACTGGGTTCTGGTGGAGGGAGTGGGGGAGTCGTGTTGCCACTGCGTGCCGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'47-47,'47-46,48-47=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(72.4=80.8)
C2:
PF0009313=VWC=PD(24.1=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACTGCGGCTGGTCAG
R:
AACACGACTCCCCCACTCC
Band lengths:
188-342
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]