MmuEX6004262 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48451062-48451885:+
Coord C1 exon
chr6:48451062-48451220
Coord A exon
chr6:48451338-48451417
Coord C2 exon
chr6:48451733-48451885
Length
80 bp
Sequences
Splice sites
3' ss Seq
TTGGCTTCAACTTTTCTCAGATG
3' ss Score
6.4
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GGATGAGCCTGCAGTGGCAGGGAGATTGGCTGGTGCTCTCTGGGGGCCTGGGGGTGGTTGTGAGACTGGACAGGTCCAGTTCCATCTCCATCTCCGTGGACCATGAGTTCTGGGGACGGACACAGGGCCTCTGTGGGCTTTACAATGGCAGGCCAGAGG
Seq A exon
ATGACTTTGTGGAGCCGGGAGGGGGATTGGCTACGCTAGCTGCTACCTTTGGGAATTCATGGAAGCTCCCTGGCTCTGAG
Seq C2 exon
CCTGGGTGTCTGGATGCGGTGGAAGTGGCTTGGGGCTGTGAGAGCCTCCTAGGAGGTACATTAACTGACTTGGAAGCTGTCAAGCTTCAAGCTCAAGCTCAGGACATGTGCCACCAACTGCTGGAGGGTCCATTCTGGCAATGTCATGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'6-11,'6-7,8-11=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(35.8=100)
A:
PF0009420=VWD=PD(11.4=29.6)
C2:
PF087426=C8=PU(26.2=41.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGGCTTTACAATGGCAGG
R:
CATTGCCAGAATGGACCCTCC
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types