DreEX6096627 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40144622-40146285:+
Coord C1 exon
chr24:40144622-40144780
Coord A exon
chr24:40144901-40144989
Coord C2 exon
chr24:40146160-40146285
Length
89 bp
Sequences
Splice sites
3' ss Seq
GATGTTTTTATTTTGTTCAGATG
3' ss Score
7.53
5' ss Seq
CAGGTGATA
5' ss Score
4.58
Exon sequences
Seq C1 exon
GAGTCAGTGTTCATTGGCTGGGGGATTTTGTGTTTGTGGAGAGTGGTTTGGGCGTCAGACTGAAGTTTGACATGGAGAACACCATCTATCTGACAGTTACTGCAGAACACCTCACAAACACTAGAGGACTTTGTGGAGTTTATAACAACAATCCTGATG
Seq A exon
ATGACTTCACTACCAGCACTGGAAGTGTGTCTCAGTACGCTGCCAGCTTTGGAAACTCATGGCGCGTACAAGATCAACAACAAAGCCAG
Seq C2 exon
GTGTGCAGTGATGCTGCTGAATTGGGCCACAGCTGTGATCTGTCCAATGATGTTTCTCTACGGAGAGATGCAGAATCAGCCTGTCATCTTCTGAAAGAGACTCCGTTCTCTCACTGCCATCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.033 C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(36.1=100)
A:
PF0009420=VWD=PD(5.4=26.7)
C2:
PF087426=C8=PU(28.0=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGTGGAGAGTGGTTTGGGC
R:
GATCACAGCTGTGGCCCAATT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]