GgaEX7001567 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:409134-409749:+
Coord C1 exon
chr2:409134-409292
Coord A exon
chr2:409394-409479
Coord C2 exon
chr2:409627-409749
Length
86 bp
Sequences
Splice sites
3' ss Seq
CAACCCCACTTTGCCCACAGATG
3' ss Score
9.94
5' ss Seq
GAGGTATTG
5' ss Score
7.44
Exon sequences
Seq C1 exon
GGATCAGTGTCACCTGGCTCGGGGACTTTGTGGCTGTGGAGAGCGGGCTGGGAGTGCACCTCAAGTTGGACGGGCGCGGGACGGTCTATGTGACGGTCAGCGCGGAGCTGCGGGGCAGCACGAAGGGGCTCTGCGGCCCCTACAATGACGACCCGACTG
Seq A exon
ATGACTTCCTGCGGGTTGAAGGGGACGTTGCCCCGTTGGCTGCCAGCTTTGGGAACTCCTGGAGGATCCCAGATGCCAACCCTGAG
Seq C2 exon
CTCTCCTGCAGTGATGCAGTGGAGCCCAGTCCTGGCTGTGCCATGGGCAGCACAGCACAGCGGGCAGCCGAGGCCATGTGTGGGATGCTGCTCACCGACCCCTTCCGCCAGTGCCACGAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.024
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(37.6=100)
A:
PF0009420=VWD=PD(5.7=27.6)
C2:
PF087426=C8=PU(27.3=51.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTATGTGACGGTCAGCGC
R:
GTGAGCAGCATCCCACACATG
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]