BtaEX0034655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008542 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr4:113439835-113440610:+
Coord C1 exon
chr4:113439835-113439993
Coord A exon
chr4:113440084-113440163
Coord C2 exon
chr4:113440458-113440610
Length
80 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTCAACCTCCCCCAGATG
3' ss Score
8.55
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGCTCAGCCTGCAGTGGCAAGGGGACTGGCTGGTGCTGTCGGGAGGCCTGGGGGTCGTTGTGCGGCTGGACCGGTCCAGTTCCGTCTCCATTTCTGTGGACCAGGAGCTCCAGGGACAGACTCAAGGCCTCTGTGGGGTCTACAACGGCCAGCCTGAGG
Seq A exon
ATGACTTCCTAGAGCCTGGCAGGGGACTGGCTGCGTTAGCTGCCACCTTTGGGAATTCCTGGAGACTCCCAGACTCAGAG
Seq C2 exon
CTTGGGTGTCTGGATGCGGTGGAGGCAGCTCAAGGCTGTGAGGACCCCCTGAGGGGCACAGAGACGGGCACGGAGGCTGGCCAGCTTCGGGCTGAAGCCCAGGATGTGTGCCACCAGCTGCTGGAAGGCCCATTCAGAGAATGTCACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008542-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.037 C2=0.235
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(36.1=100)
A:
PF0009420=VWD=PD(4.8=25.9)
C2:
PF087426=C8=PU(26.2=41.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATTTCTGTGGACCAGGAGC
R:
CACACATCCTGGGCTTCAGC
Band lengths:
182-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development