MmuEX6005139 @ mm9
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83240768-83246739:+
Coord C1 exon
chr6:83240768-83240840
Coord A exon
chr6:83245865-83245933
Coord C2 exon
chr6:83246566-83246739
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACCTCTCCTCTCATTTCAGTAC
3' ss Score
7.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGCAGAGAGTTACTGGAGTCATGGTCTTCATCCTGACAGGCATCTCCGTCTTCCTGGCTCCTATCCTGAAG
Seq A exon
TACATCCCCATGCCAGTGCTCTATGGAGTCTTCCTCTACATGGGTGTGGCCTCCCTGAATGGCATCCAG
Seq C2 exon
TTCTGGGAACGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCACGCTTTCCTGCGCCACGTGCCCCTTCGCCGCATTCACCTGTTCACCCTGGTGCAGATCCTCTGCCTGGCCCTGCTCTGGATCCTTAAGTCAACCATGGCTGCCATCATCTTCCCGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'26-28,'26-27,27-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGTCTTCCTGGCTCCTAT
R:
TTAAGGATCCAGAGCAGGGCC
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: