RnoEX0082850 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114987797-114994627:+
Coord C1 exon
chr4:114987797-114987869
Coord A exon
chr4:114993713-114993781
Coord C2 exon
chr4:114994454-114994627
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACCTCTCCTCTCATTTCAGTAC
3' ss Score
7.89
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGAGCAGAGAGTTACTGGAGTCATGGTCTTCATTCTGACAGGCATCTCCGTCTTCCTGGCTCCTATCCTGAAG
Seq A exon
TACATCCCCATGCCAGTGCTCTATGGTGTCTTCCTCTACATGGGTGTGGCCTCCCTGAATGGCATCCAG
Seq C2 exon
TTCTGGGACCGCTGTAAGCTTTTCCTCATGCCAGCCAAGCACCAGCCGGACCATGCCTTCCTGCGCCACGTGCCCCTTCGCCGGATCCACCTGTTCACCCTGGTGCAGATCCTCTGCCTGGCCCTGCTCTGGATCCTTAAGTCAACCATGGCTGCTATCATCTTCCCGGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'31-37,'31-35,32-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(13.0=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACAGGCATCTCCGTCTT
R:
TTAAGGATCCAGAGCAGGGCC
Band lengths:
180-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]