DreEX6011067 @ danRer10
Exon Skipping
Gene
ENSDARG00000002771 | SLC4A5 (1 of 2)
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr5:27454983-27462393:-
Coord C1 exon
chr5:27462321-27462393
Coord A exon
chr5:27458844-27458912
Coord C2 exon
chr5:27454983-27455156
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTGCTTTATTTGTAGTTC
3' ss Score
7.52
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGAACAAAGACTGACAGGAATCCTGGTCTTTGTGCTGACAGGAGTGTCTATTTTCTTGGCCCCGATCCTGCAG
Seq A exon
TTCATCCCTATGCCAGTCTTGTATGGAGTTTTCCTCTACATGGGCGTTGCTTCTCTCAGTGGCATCCAA
Seq C2 exon
TTCTGGGACAGAATTAAACTGATCATGATGCCAGCGAAACACCAGCCAGACTTTTCATACCTGCGTCATGTGCCGCTCAGGAGAGTCCATCTATTCACACTGGTGCAGATTGTGTGCTTAGCAGTACTCTGGATCCTCAAATCTACTTTCCTCGCCATCATCTTCCCTGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002771-'24-28,'24-27,25-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(4.6=100)
A:
PF0095516=HCO3_cotransp=FE(4.2=100)
C2:
PF0095516=HCO3_cotransp=PD(6.5=58.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGTCTTTGTGCTGACAGG
R:
AAGCACACAATCTGCACCAGT
Band lengths:
171-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]