MmuEX6005144 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83267406-83271097:+
Coord C1 exon
chr6:83267406-83267560
Coord A exon
chr6:83268194-83268382
Coord C2 exon
chr6:83270923-83271097
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCATCTGCCTTCTCTTTCAGGAA
3' ss Score
13.37
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
CTATTCAGCGATGTGGCTTATAAAGCTCGGAACCGAGAAGATCTGATCGCAGGGATTGATGAATTTCTAGACGAGGTCATTGTCCTTCCCCCTGGAGAGTGGGACCCAAACATCAGAATTGAGCCACCCAAGAAAGTTCCCTCAGCTGACAAGAG
Seq A exon
GAAATCTGTGTTCTCTCTGGCAGAGCCGGGCCAGATGAATGGCTCTGTGGGCGGAGGCGGAGCCTCGGCTGGAGGAGGCGGCAGTGGCGGAGGGGCTGGAGGCAGCGGGGCTGGCGGAGTGGGCAGTGGCGACGAAGCTGAGATGCCAGCTATGCACGAAATCGGGGAGGAGCTGATCTGGACCGGAAG
Seq C2 exon
GTTCTTTGGAGGACTGTGTCTGGATGTCAAGAGGAAGCTGCCCTGGTTCCCAAGCGACTTCTATGATGGCTTCCACCTCCAGTCCATCTCTGCTGTTCTGTTCATCTACCTCGGCTGTATTACCAACGCGATCACCTTTGGTGGGCTTCTGGGGGATGCCACAGACAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'6-28,'6-17,17-28=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.547 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=69.2)
A:
PF0095516=HCO3_cotransp=PU(1.2=9.4)
C2:
PF0095516=HCO3_cotransp=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCTTCCCCCTGGAGAG
R:
GTAGTTGTCTGTGGCATCCCC
Band lengths:
249-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types