RnoEX0082846 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114964195-114967530:+
Coord C1 exon
chr4:114964195-114964349
Coord A exon
chr4:114965060-114965248
Coord C2 exon
chr4:114967356-114967530
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCATCCGCCTTCTCTTTCAGGAA
3' ss Score
12.8
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
CTCTTCAGCGATGTGGCTTATAAAGCACGGAATCGAGAAGATCTGATCGCAGGAGTTGATGAATTTCTAGATGAGGTCATTGTCCTTCCCCCTGGAGAGTGGGATCCAAACATCAGAATTGAGCCGCCCAAGAAAGTTCCCTCAGCCGACAAGAG
Seq A exon
GAAATCTGTGTTCTCTCTGGCAGAGCTGGGCCAGATGAATGGCTCTGTGGGCAGAAGCGGAGCCTCGGCCGGAGGAGGCGGCAGTGGCGGAGGGGCTGGAGGCAGCGGGGCCGGCGGAGGAGGCAGTGGCAACGAGGCTGAGATGCCAGCTATGCATGAAATTGGGGAGGAGCTGATCTGGACCGGAAG
Seq C2 exon
GTTTTTTGGAGGACTGCGTCTGGATGTAAAGAGGAAGCTGCCCTGGTTCCCAAGTGACTTCTATGATGGCTTCCACATCCAGTCCATCTCTGCTGTCCTGTTCATCTACCTCGGCTGTATCACCAATGCTATCACCTTCGGTGGGCTTCTGGGGGATGCCACAGACAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'13-19,'13-15,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.484 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=69.2)
A:
PF0095516=HCO3_cotransp=PU(1.2=9.4)
C2:
PF0095516=HCO3_cotransp=FE(11.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGTCCTTCCCCCTGGAGAG
R:
TAATTGTCTGTGGCATCCCCC
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]