BtaEX0033346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10371591-10374120:+
Coord C1 exon
chr11:10371591-10371745
Coord A exon
chr11:10372099-10372287
Coord C2 exon
chr11:10373946-10374120
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGTCCCCCTTCTCCTTCCAGGAA
3' ss Score
14.09
5' ss Seq
AAGGTGCCC
5' ss Score
5.96
Exon sequences
Seq C1 exon
CTCTTCAGCGATGTGGCCTACAAGGCCCGGAATCGAGAGGATCTGATCGCGGGGATCGATGAGTTTCTGGACGAGGTCATCGTGCTTCCCCCGGGAGAATGGGACCCGAATATCCGAATTGAGCCACCCAAGAAGGTGCCTTCTGCTGACAAGAG
Seq A exon
GAAGTCTGTGTTCTCCCTGACTGAATTAGGCCAGATGAACGGCTCCGTGGCGGGAGGCGGCGGCGGGGCTGCTGGAGGCGGCGCTGCAGGCGGCGGAGGGGGCGGCGGGGCCGGCGGAGGGAGCGGCGCGGCTGATGGAGAGATGCCAACAGCGCATGAAATCGGGGAAGAGCTGATCTGGACAGGAAG
Seq C2 exon
GTTCTTCGGTGGCCTGTGTCTTGATGTCAAGAGGAAGCTGCCCTGGTTCCCCAGTGACTTCTACGACGGCTTCCACATTCAGTCCGTCTCTGCCATCCTGTTCATCTACCTCGGCTGCATCACCAACGCGATCACCTTTGGTGGGCTTCTGGGAGATGCCACTGACAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.359 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=69.2)
A:
PF0095516=HCO3_cotransp=PU(1.1=9.4)
C2:
PF0095516=HCO3_cotransp=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCAGCGATGTGGCCTAC
R:
GCAGAGACGGACTGAATGTGG
Band lengths:
248-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development