GgaEX7011579 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2849102-2849880:-
Coord C1 exon
chr22:2849726-2849880
Coord A exon
chr22:2849444-2849587
Coord C2 exon
chr22:2849102-2849276
Length
144 bp
Sequences
Splice sites
3' ss Seq
AATAATAATAATTCCCACAGGAA
3' ss Score
6.18
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CTCTTCAGCGATGTTGCTTACAAAGCCCGAGATAGAGAAGATCTGATTGCTGGCATAGATGAATTTCTGGATGAAGTCATTGTCCTGCCACCTGGCGAGTGGGACCCCAACATTAGAATCGAGCCACCCAAAAAAGTGCCCTCAGCTGAGAAGAG
Seq A exon
GAAATCAGTTTTCTCTTTGAACGAAGTGGGGCAAATGAACGGCACAGCCGGCGGGGCAGGCGCTGGGAGCGGCGGAGGAGGCAGTGATGATGGGGAGATGCCTGAAGTGCATGAAATAGGGGAAGAGCTGGCATGGACTGGCAG
Seq C2 exon
GTTTTGTGGTGGCCTCTATTTGGATATCAAGAGGAAGCTGCCCTGGTTCCCAAGTGACTTCTATGAAGGCTTTCATATCCAGTCCATCTCTGCCATCTTGTTCATCTACCTGGGCTGCATCACCAACGCCATCACATTCGGGGGTTTGCTTGGCGATGCGACAGACAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=0.449 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=69.2)
A:
PF0095516=HCO3_cotransp=PU(1.3=12.2)
C2:
PF0095516=HCO3_cotransp=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCATTGTCCTGCCACCTG
R:
TGGTAGTTGTCTGTCGCATCG
Band lengths:
256-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]