DreEX6089865 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:45022243-45023963:+
Coord C1 exon
chr10:45022243-45022397
Coord A exon
chr10:45023117-45023245
Coord C2 exon
chr10:45023789-45023963
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGTTGTGTTGTTTTCTGCAGGAA
3' ss Score
12.33
5' ss Seq
CCGGTACAT
5' ss Score
5.7
Exon sequences
Seq C1 exon
CTGTTCAGTGACGTGGCCTATAAAGCCAGAGATCGAGAGGATTTAATCGCCGGGATCGATGAGTTCCTGGATGAGGTGATCGTTCTTCCTCCGGGCGAATGGGACCCCAAGATCCGCATCGAACCCCCCAAAAAACTGCCTTCAGCAGAGATGAG
Seq A exon
GAAGTCTGTGTTTTCTCTGAATGAGCTCGGGCAGCCGAATGGAAACGCCGGCGGAGGATCAGCGTCTGCAGAAGATGAGGAGATGCCGGCTCCGCATGAGCTGGGAGAGGAGCTGAAGTTCACCGGCCG
Seq C2 exon
GTTCTGTGGAGGACTCTGGCTAGACATCAAGCGGAAAGCACCCTGGTTTTTCAGCGATTTCTATGAAGGTTTCCACATCCAGTCGGTGTCCGCGGTGCTCTTCATCTACCTGGGCTGCATCACCAATGCCATTACTTTTGGGGGACTATTGGGGGACGCCACCGACAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387-'13-15,'13-13,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.420 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(14.2=69.2)
A:
PF0095516=HCO3_cotransp=PU(1.2=13.6)
C2:
PF0095516=HCO3_cotransp=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGGATTTAATCGCCGGG
R:
TGATGCAGCCCAGGTAGATGA
Band lengths:
244-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]