MmuEX6005149 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83261411-83263571:+
Coord C1 exon
chr6:83261411-83261563
Coord A exon
chr6:83262473-83262568
Coord C2 exon
chr6:83263516-83263571
Length
96 bp
Sequences
Splice sites
3' ss Seq
TGCCTTCCTGCCCCTCCCAGACC
3' ss Score
9.8
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
ATGATGTCATTGAGAAGCAGATAGAGGATGGACTTCTGCGACCTGAGCTCCGGGAGAGGGTCAGCTACGTGCTCCTGAGGAAGCATCGTCACCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGACATCGGGAAGTCGGTTTCCACGACGA
Seq A exon
ACCGAAGCTCTGCCCGGAGCTCCTCAGCAGGCCCAACTCTGCACCGCTCCACTGAGGACCTGAGGATTCGACAAAGCACCAGCTATGGTCATCTGT
Seq C2 exon
GTCATGCCCAGAGTAGAAGCATGAATGACATCTCTCATACCCCAAACACAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'11-10,'11-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.636 C2=0.789
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.0=100)
A:
PF075658=Band_3_cyto=FE(11.9=100)
C2:
PF075658=Band_3_cyto=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGACTTCTGCGACCTGAG
R:
TGGTCTGTGTTTGGGGTATGAG
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types