BtaEX6043071 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004884 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr11:10362253-10365638:+
Coord C1 exon
chr11:10362253-10362408
Coord A exon
chr11:10363161-10363256
Coord C2 exon
chr11:10365583-10365638
Length
96 bp
Sequences
Splice sites
3' ss Seq
ACCCCTTCTGTGCCTCCCAGGTC
3' ss Score
10.55
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
ACGATGTCATTGAGAAGCAAATTGAGGATGGCCTCCTTCGTCCAGAGCTCCGCGAGAGGGTCAGCTACGTCCTCTTGAGGAAACACCGCCACCAAACCACAAAGCCCATCCACCGCTCCTTGGCTGACATTGGAAAGGCGGTCTCCTCCACCAGCA
Seq A exon
GTCGAAGCCCAGCCCGGAGCCCCAAGGCCGGCCCGAGCCTACACCACTCCACTGAGGACCTGAGGGTGCGGCAAAGTGCGAATTACGGCCGTCTGT
Seq C2 exon
GTCACGCCCAGAGCAGAAGCATGAACGATATTTCTCTCACCCCAAATACCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004884-'11-7,'11-6,12-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.636 C2=0.579
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.3=100)
A:
PF075658=Band_3_cyto=FE(11.9=100)
C2:
PF075658=Band_3_cyto=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTCGTCCAGAGCTCC
R:
TGGTCGGTATTTGGGGTGAGA
Band lengths:
180-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]