DreEX0073087 @ danRer10
Exon Skipping
Gene
ENSDARG00000104387 | slc4a5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:ZFIN;Acc:ZDB-GENE-091112-19]
Coordinates
chr10:44999922-45003590:+
Coord C1 exon
chr10:44999922-45000071
Coord A exon
chr10:45001059-45001160
Coord C2 exon
chr10:45003535-45003590
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTGGGTCTGCATCAGACC
3' ss Score
3.85
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
Exon sequences
Seq C1 exon
ATGACATGATTGAGAAGCAGGTTCAGGAGGGTCTCATCGCTCCAGAGATCCGGGAGAAGGTCAGTTTCGTGCTTTTGCGGAAACACCGTCACCAAACCAAGAAGCCGATCCATCGCTCGCTGGCGGACATCGGGAAGCCCAGTCCATCCA
Seq A exon
ACCGCAGTCCGAGTCCCAGCCCGAGTGCCCGCTCTGGGTCGGGTTTTCACCGCTCCACAGAAGACCTGCGGGCGCGCCAGAGCGCCGGCCTCGGGAAACTGC
Seq C2 exon
ATCCTTCTCAGTGCCGCAGTATGAATGATATTTCCGTCACACCCAGCAGTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104387_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=0.886 C2=0.483
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.8=100)
A:
PF075658=Band_3_cyto=FE(12.6=100)
C2:
PF075658=Band_3_cyto=FE(7.1=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGATTGAGAAGCAGGTTCAGG
R:
CTGGTCACTGCTGGGTGTGA
Band lengths:
203-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]