RnoEX0082853 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114955912-114959964:+
Coord C1 exon
chr4:114955912-114956064
Coord A exon
chr4:114957298-114957393
Coord C2 exon
chr4:114959909-114959964
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTTGCCCCCCACCCCCCAGATC
3' ss Score
9.89
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
Exon sequences
Seq C1 exon
ATGATGTCATTGAGAAGCAGATAGAGGGTGGACTTCTGCGACCAGAGCTCCGGGAAAGGGTCAGCTACGTGCTCCTGAGGAAGCATCGCCACCAAACCAAGAAGCCCATCCACCGTTCCCTTGCAGACATTGGGAAGTCGGTTTCTACTACGA
Seq A exon
ATCGCAGCTCTGCCCGGAGCCCCTCAGCAGGCCCAACTCTGCACCACTCCACCGAGGACCTGAGGATTCGGCAAAGCACCAGCTATGGTCATCTGT
Seq C2 exon
GTCATGCCCAGAGTAGAAGCATGAATGACATCTCCCATACCCCAAACACAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.308 A=0.667 C2=0.842
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.0=100)
A:
PF075658=Band_3_cyto=FE(11.9=100)
C2:
PF075658=Band_3_cyto=FE(6.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAGGGTGGACTTCTGCGAC
R:
CTGTGTTTGGGGTATGGGAGA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]