GgaEX7011574 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2853028-2855491:-
Coord C1 exon
chr22:2855336-2855491
Coord A exon
chr22:2853386-2853481
Coord C2 exon
chr22:2853028-2853083
Length
96 bp
Sequences
Splice sites
3' ss Seq
TCTATCCTCTCCCTTTGCAGATC
3' ss Score
13.75
5' ss Seq
TGCGTAAGC
5' ss Score
5.73
Exon sequences
Seq C1 exon
ATGATGTCATTGAGAAGCAGATAGAGGACGGTCTGCTCAAACCTGAGCTGAGGGAAAAGATCAGCTACGTGCTCCTCAGGAAGCACCGCCACCAGACCAAGAAGCCAATCCATCGGTCCTTGGCCGACATTGGCAAGTCGGTGTCCTCCAACACAA
Seq A exon
ATCGCAGCCCCGTTCGGAGCCCAGCTGCAGGTGCTGCCTTCCACCGCTCCACGGAGGACCTTCGGATGCGGCAGAGCGCGAGCTACGGCCGCCTGC
Seq C2 exon
GCCACGTGCAAAGCCGAAGCATGAATGATATCTCAGACACACCCAGCACTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=0.455 C2=0.474
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(19.3=100)
A:
PF075658=Band_3_cyto=FE(11.9=100)
C2:
PF075658=Band_3_cyto=FE(6.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATAGAGGACGGTCTGCT
R:
CATTCATGCTTCGGCTTTGCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]