MmuEX6005984 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108473282-108501103:+
Coord C1 exon
chr6:108473282-108473442
Coord A exon
chr6:108491897-108492058
Coord C2 exon
chr6:108499747-108501103
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTTTGTGAATTCTAGGAA
3' ss Score
10.58
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTTGGAAAGGGACAAGTTTGACAATAAGACTGTCACCTTTGAAGAGCACATCAAGGAAGAGCACAACATGTGGCACTATCTGTGCTTCATCGTGCTGGTGAAAGTGAAGGACTCCACAGAGTACACCGGGCCTGAGAGTTACGTGGCAGAGATGATCAGG
Seq A exon
GAAAGAAACCTTGATTGGTTCCCCAGAATGAGAGCCATGTCCCTGGTCAGCAGCGATTCTGAAGGGGAACAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCTACCATGAAGCTGGTCACCAATCTTTCTGGCCAGCTGTCAGAACTAAAGGACCAG
Seq C2 exon
ATGACAGAACAGAGGAAGCAGAAACAAAGAATCGGCCTTCTAGGACATCCTCCTCACATGAATGTCAACCCACAGCAGCCGGCCTAGGCAAATGAGGCAGAGGGACTCTGCTCAGCCCTCTGTATATCACTGTCAGGGTGGGTACGGCTCATTGGTTCTGATTTGCCCACTAAGGGTACATGTGCGCTTAGTACATTTGTAAATACTCAGTTTTGTATTGTATGTATATGATTGCTATTCTCAGAGGTTTGGACTTTCGTATTGTAATTAGCTCTGTTGGCATGGTGACTTGTCACTCCTGCCAAAAATATTAAAAATGCCTTTTTTGGAAGGACTACAGAAAGTACCTGATTTGCACTTGAACCAGATTATAGATTTAAAAGTATATGACATGTATTTTGTATTTAAAACTAGAATAGCCAGTATTTATGTTTTTTATAAAACTGTGCAATACAAATTATGCAATCACCATAACTTTGTAACTCCTGAGTGTCCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'74-73,'74-72,75-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.389 C2=0.964
Domain overlap (PFAM):
C1:
PF153901=DUF4613=PU(31.4=70.4)
A:
PF153901=DUF4613=FE(43.8=100)
C2:
PF153901=DUF4613=PD(22.3=93.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGCTTCATCGTGCTGG
R:
CAGAACCAATGAGCCGTACCC
Band lengths:
243-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: