DreEX0040336 @ danRer10

Exon Skipping

Gene

ENSDARG00000074149 | itpr1b

Description

inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]

Coordinates

chr11:35515344-35539138:-

Coord C1 exon

chr11:35538978-35539138

Coord A exon

chr11:35521588-35521749

Coord C2 exon

chr11:35515344-35516454

Length

162 bp

Sequences

Splice sites

3' ss Seq

CATCGCCGTTATTCCAACAGGAT

3' ss Score

10.34

5' ss Seq

CAGGTGAGA

5' ss Score

9.22

Exon sequences

Seq C1 exon

GTTTGGAGAGGGACAAGTTTGACAACAAAACGGTGACGTTTGAGGAACACATTAAGGTGGAGCACAACATGTGGCACTATCTCTTCTTCATTGTGCTGGTGAAAGTCAAAGACTCCACTGAATTCACTGGGCCTGAGAGTTATGTGGCTGAAATGATCCGG

Seq A exon

GATCACAATCTGGACTGGTTTCCTCGAATGCGCGCCATGTCTCTGGTCAGCAGCGATGCCGAGGGTGAACAGAATGAGATCAGGAGTCTGCAAGAGAAGCTGGAATCCACCATGAAGCTGATCTCCAACCTGTCAAGCCAACTCACAGAACTAAAAGAACAG

Seq C2 exon

ATGACGGAGCAGAGGAAACAGAAGCAGAGGATCGGCTTATTGGGACACCCACAACACATGAACGTGAACCCCCAGCAGCCCGCCTGAACTCCATCCCATCACCACCACCACAACCCTCTCTCAGTATGTGCCAAAACAAGACTCTCTCGCCCCTTCACATCCATCACAGTGCCAAACGAGGGCAAGTGAATCTGCACGAATGACTGAGTCTCACTAAACACCGCTCAGACACTCATGGTTTTGTATTGACCCATAGCAGTCAGTATTTGATGTCTTATTTTTGTATTTTGTGCAATATTAATACTTTAATATGCAACTACATCTGTACATTATGTCTTAAAGGGAAGTTTGTTTCTTTCGCTTCACGGTAAACACATTAGAGGTCAGGAATATACAGTCTGTGTATATGTATATTGGGGAAAATTAGGCCTTTTTCTTATTTAAGCACATTTATTTATATTGACGTATATCTAAAAATGAAATGCTTGGAAGAGATTATG

VastDB Features

Vast-tools module Information

Secondary ID

ENSDARG00000074149-'70-71,'70-70,71-71

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.222 C2=0.964

Domain overlap (PFAM):

C1:

PF041569=IncA=FE(31.2=100),PF040489=Sec8_exocyst=PU(15.6=27.8)

A:

PF041569=IncA=FE(31.2=100),PF040489=Sec8_exocyst=FE(55.2=100),PF079267=TPR_MLP1_2=PU(77.2=81.5),PF064286=Sec2p=PU(66.2=79.6),PF127182=Tropomyosin_1=PU(70.7=75.9)

C2:

PF041569=IncA=PD(7.6=44.8),PF040489=Sec8_exocyst=PD(26.0=86.2),PF079267=TPR_MLP1_2=PD(19.3=37.9),PF064286=Sec2p=PD(30.8=69.0),PF127182=Tropomyosin_1=PD(25.9=51.7)

Main Inclusion Isoform:

ENSDARP00000033695