RnoEX0045409 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140552885-140579675:+
Coord C1 exon
chr4:140552885-140553045
Coord A exon
chr4:140571547-140571708
Coord C2 exon
chr4:140579391-140579675
Length
162 bp
Sequences
Splice sites
3' ss Seq
CTTCCCATTGTGATTTCTAGGAA
3' ss Score
9.25
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTTGGAAAGGGACAAGTTTGACAATAAGACCGTCACCTTTGAAGAGCACATTAAGGAAGAACACAACATGTGGCACTATCTGTGCTTCATCGTGCTGGTGAAAGTGAAGGACTCCACCGAGTACACCGGGCCCGAGAGCTACGTGGCAGAGATGATCAGG
Seq A exon
GAAAGAAACCTTGATTGGTTCCCCAGGATGAGAGCCATGTCCCTGGTCAGCAGTGACTCTGAAGGGGAACAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTGGTCACCAATCTTTCTGGCCAGCTGTCAGAACTAAAGGACCAG
Seq C2 exon
ATGACAGAACAAAGGAAGCAGAAACAAAGAATTGGCCTTCTAGGACATCCTCCTCACATGAATGTCAACCCACAGCAGCCAGCCTAAGCAAATGAGACGGAGGGACTGTACTCAACCCTTTTTAAATTATTGTCAGCGTGGGTCTGGCTCTTGGTTCTGATCTGCCCTCTAAGGTTACATGTGCGCTTAGTACATTTGTAAATACTCGGTTTTGTATTGTATGTATATGATTGCAATTCTCAGAGGTTTGGACTTTCGTATTGTAATTAGCTCTGTTGGCATGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'99-108,'99-103,102-108
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.368 C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGCTTCATCGTGCTGG
R:
GGCAGATCAGAACCAAGAGCC
Band lengths:
249-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]