GgaEX0012017 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18520641-18538450:+
Coord C1 exon
chr12:18520641-18520801
Coord A exon
chr12:18531975-18532136
Coord C2 exon
chr12:18536936-18538450
Length
162 bp
Sequences
Splice sites
3' ss Seq
AACTTGTGCCTGGTTCTCAGGAG
3' ss Score
5.78
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTTTGGAAAGAGATAAGTTTGATAACAAGACAGTCACCTTTGAAGAGCACATTAAAGAAGAGCACAACATGTGGCATTATTTGTGCTTTATCGTGTTAGTGAAAGTAAAAGATTCAACAGAATATACAGGACCAGAAAGTTACGTGGCAGAAATGATCAAG
Seq A exon
GAGCGAAACCTGGACTGGTTCCCCCGGATGAGAGCCATGTCCCTCGTCAGCAGCGACTCGGACGGAGAGCAGAACGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTGGTGACCAACCTCTCTGGGCAGCTGTCAGAGCTGAAGGACCAG
Seq C2 exon
ATGACTGAACAGAGGAAGCAGAAACAGCGCATCGGTCTCCTAGGACACCCTCCTCCCATGAATGTGAACCCACAGCAACCAGCATAAGTCAGAAGGGTCGCTTCTCCCTCTCGCAGCAACGTGAATAATGCTAACCGAGTCCAGATCCAACCACTGAGGCTGCTTCCGTGTACGTTTAGTTCATCTTGTAAATACCCTGTTTTTATACTGTATGTATATGACTGCTACTATATAAAGTTTGGGGCATACGTATTGTAATTAGAACTGTTGGCACACGCCGGAGGTTAAACTTGTGCCAAAACTATCAAAATTGCCTTTTTATTGGAAGGACTAAAGAGAGCACCTGAATTGCACTTGAAAAGAATATTTGACTACGTGACATGTATTTTGTATTTAAAGAATAGAATAGCTAGTATTTATGTTTTTATACAATTGTGCAATATGAATTATGCAATCACAATATATTTGTAACTCCTGAATGTCCTAAAGGGAGTGCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'78-91,'78-89,82-91
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.389 C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCACCTTTGAAGAGCACA
R:
TATTCACGTTGCTGCGAGAGG
Band lengths:
258-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]