BtaEX6093974 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21615593-21645150:-
Coord C1 exon
chr22:21644990-21645150
Coord A exon
chr22:21625314-21625475
Coord C2 exon
chr22:21615593-21616182
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTTTTCCATCTGGGTTCTAGGAA
3' ss Score
8.29
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTTGGAAAGAGACAAGTTTGACAACAAGACCGTCACATTTGAAGAGCACATCAAGGAAGAACACAACATGTGGCATTACCTGTGCTTCATCGTCCTGGTGAAAGTGAAGGACTCCACGGAGTACACAGGGCCCGAAAGTTACGTGGCAGAGATGATCAAG
Seq A exon
GAAAGAAACCTAGACTGGTTCCCGAGGATGAGAGCCATGTCCCTGGTCAGCAGCGATTCAGAAGGAGAGCAGAATGAGCTGAGGAACCTGCAGGAGAAGCTGGAGTCCACCATGAAGCTTGTCACCAACCTCTCTGGACAGCTGTCAGAATTAAAGGATCAG
Seq C2 exon
ATGACAGAACAAAGGAAGCAGAAACAAAGAATTGGTCTTCTAGGACATCCTCCTCACATGAATGTCAACCCACAGCAACCAGCATAAGCAAATGAACTAAAGGCATCGTATTTACCTTTTTAAATTATTTTTAGTGTGGGTCTGGCTAATTAGTTCTGATTCACCCACAGAGGTTACATTTATGCTTAGTATATTTGTAAATACTCAGTTTTATACTGTATGTATATGATTGCTACTCTCCAGGTTTGGATATATGTATTGTAATTAGAATTGTTGGCAGGGTGAAATTTCATTTGTGCCAAAAAAGTATTTAAAATGCCTTTTTGGGAAGGACTAAAGAAAGCACCTGACTTGCACTTGAACCACATTATAGATTTAAAAGTATATGACATGTATTTTGTATTTAAATCTAGAATAACCAGTATTTATGTTTTTTTATAAAACTGTGCAATACCAATTATGCAATCACCATAAATTTATAACTCCTGTGTATCCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'73-77,'73-73,77-77=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.389 C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCTTCATCGTCCTGGTG
R:
ACCTCTGTGGGTGAATCAGAAC
Band lengths:
255-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]