MmuEX6006008 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108344229-108346107:+
Coord C1 exon
chr6:108344229-108344399
Coord A exon
chr6:108344829-108344894
Coord C2 exon
chr6:108345970-108346107
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTTTGGTCCCTAGGAG
3' ss Score
11.33
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTTCAACTGCTGGTTACTAGCCAAGATGTGGACAACTACAAACAGATCAAGCAAGACTTGGACCAACTAAGGTCCATTGTGGAGAAGTCTGAGCTCTGGGTGTACAAAGGCCAAGGTCCCGATGAGCCTATGGACGGAGCCTCCGGTGAAAATGAGCATAAGAAAACCGAG
Seq A exon
GAGGGGACGAGCAAGCCACTGAAGCACGAGAGCACCAGCAGCTACAACTACCGAGTGGTGAAAGAG
Seq C2 exon
ATTTTGATTCGACTTAGCAAGCTCTGCGTGCAGGAGAGCGCGTCGGTGAGGAAGAGCCGGAAGCAGCAGCAACGACTGCTGAGGAACATGGGCGCACACGCTGTGGTGCTGGAGCTGCTGCAGATCCCCTACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.409 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
C2:
PF0136516=RYDR_ITPR=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTCTGGGTGTACAAAGGC
R:
CCATGTTCCTCAGCAGTCGTT
Band lengths:
172-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: