BtaEX0018595 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21777809-21780014:-
Coord C1 exon
chr22:21779844-21780014
Coord A exon
chr22:21779097-21779162
Coord C2 exon
chr22:21777809-21777946
Length
66 bp
Sequences
Splice sites
3' ss Seq
ACGTTCGTTTTGGTTCCTAGGAG
3' ss Score
9.13
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GTTCAGCTGCTCGTTACCAGCCAAGATGTCGATAACTACAAGCAGATAAAACAAGACCTGGACCAGCTGAGATCCATCGTGGAGAAGTCAGAGCTCTGGGTGTACAAAGGGCAGGGCCCCGACGAGGCCATGGACGGCGCATCTGGAGAAAACGAGCATAAGAAGACAGAG
Seq A exon
GAGGGGAATAACAAGTCACAGCAGCATGAGAGCACCAGCAGCTACAACTACAGGGTGGTCAAAGAG
Seq C2 exon
ATTTTGATCCGACTGAGCAAACTCTGTGTTCAAGAGAGCGCATCCGTGCGGAAGAGCAGGAAGCAGCAACAGCGCTTGCTCCGGAACATGGGCGCCCACGCCGTGGTGCTGGAGCTGCTGCAGATCCCCTACGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.545 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
C2:
PF0136516=RYDR_ITPR=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGACCTGGACCAGCTGA
R:
GGATGCGCTCTCTTGAACACA
Band lengths:
167-233
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development