DreEX6092753 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35666177-35669649:-
Coord C1 exon
chr11:35669476-35669649
Coord A exon
chr11:35668359-35668427
Coord C2 exon
chr11:35666177-35666314
Length
69 bp
Sequences
Splice sites
3' ss Seq
CGTGTTTATTCCTTTTCTAGAGG
3' ss Score
9.1
5' ss Seq
GAGGTAAAG
5' ss Score
8.27
Exon sequences
Seq C1 exon
GTTCAGCTTTTAGTGACCAGTCAAGACGTCGACAATTACAAGCAGATCAAATCAGACCTTGACCAGCTGCGATCCAACGTGGAGAAATCTGAGCTCTGGGTTTATAAGCGTCAGGGTGATGAAGGCATGGATGGAGGAGACGGACTTCCTGCAGAGTCTGACCACAAGAAGAAG
Seq A exon
AGGGACTCTGGCTCAGACAAAAAAAAGACGGACGGAAATGGCAGTGACAATTACAGAGACGTAAAAGAG
Seq C2 exon
ATCCTCCTGCGTCTCAGTAAACTGTGCGTGCAGGAAGGGCCGTCGGGGAAGAAGAGTAAGAAACAGCAGCAAAGGCTCTTGAGGAACATGGGAGCTCATTCAGTGGTGCTGGAGCTTCTGCAGATCCCATATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.328 A=0.652 C2=0.239
Domain overlap (PFAM):
C1:
NO
A:
PF0136516=RYDR_ITPR=PU(1.7=13.0)
C2:
PF0136516=RYDR_ITPR=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGATGGAGGAGACGGACT
R:
ATGGGATCTGCAGAAGCTCCA
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]