RnoEX6014533 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140427653-140429112:+
Coord C1 exon
chr4:140427653-140427823
Coord A exon
chr4:140428249-140428314
Coord C2 exon
chr4:140428975-140429112
Length
66 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTTTTGGTTCCTAGGAG
3' ss Score
10.13
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GTTCAACTGCTGGTTACTAGCCAAGATGTGGACAACTACAAACAGATCAAGCAAGACTTGGACCAGCTAAGATCCATCGTGGAGAAGTCTGAGCTCTGGGTATACAAAGGCCAGGGTCCCGATGAGCCTATGGACGGAGCCTCTGGTGAAAACGAACATAAGAAAACTGAG
Seq A exon
GAGGGGACCAGTAAGCCACTGAAGCACGAAAGCACCAGCAGCTACAACTACCGAGTGGTGAAAGAG
Seq C2 exon
ATTCTGATTCGACTTAGCAAGCTCTGTGTTCAAGAGAGCGCGTCGGTGAGGAAGAGCAGGAAGCAGCAGCAGCGACTGCTGAGGAACATGGGTGCCCATGCTGTGGTGCTGGAGCTGCTGCAGATCCCCTATGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'46-46,'46-44,47-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.351 A=0.409 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
C2:
PF0136516=RYDR_ITPR=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTATACAAAGGCCAGGGT
R:
CACCCATGTTCCTCAGCAGTC
Band lengths:
169-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]