Special

GgaEX1030868 @ galGal3

Exon Skipping

Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19092783-19095132:+
Coord C1 exon
chr12:19092783-19092953
Coord A exon
chr12:19094066-19094131
Coord C2 exon
chr12:19094995-19095132
Length
66 bp
Sequences
Splice sites
3' ss Seq
TGTCTGATTCTTATCCACAGGAA
3' ss Score
10.79
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GTTCAACTGCTTGTTACCAGCCAAGATGTTGACAACTACAAGCAGATAAAACAAGATTTGGACCAGCTGAGATCTATTGTGGAAAAATCCGAGCTTTGGGTATACAAAGGCCAGGGTCCTGATGAGACCATGGATGGAGTGCCAGGTGAAAACGAACACAAGAAGAAAGAG
Seq A exon
GAAGGTCACAGCAAGTCACAGAAGCCTGAAAGTACGAGCAGCTACAACTACCGCGTAGTGAAAGAG
Seq C2 exon
ATCCTGCTGCGGCTCAGCAAGCTGTGCGTCCAGGAGAGCGCCTCGGTCCGCAAGAGCCGCAAGCAGCAGCAGCGACTGCTGAGGAACATGGGAGCACATGCAGTTGTGCTTGAATTGCTGCAGATCCCCTATGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'29-33,'29-32,30-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.326 A=0.545 C2=0.065
Domain overlap (PFAM):

C1:
NO
A:
PF0136516=RYDR_ITPR=PU(1.7=13.6)
C2:
PF0136516=RYDR_ITPR=FE(25.0=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTATACAAAGGCCAGGGT
R:
AACTGCATGTGCTCCCATGTT
Band lengths:
180-246
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]