MmuEX6006012 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108339361-108342579:+
Coord C1 exon
chr6:108339361-108339548
Coord A exon
chr6:108341825-108341963
Coord C2 exon
chr6:108342525-108342579
Length
139 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCCTTGAATCTTCAGTTT
3' ss Score
7.41
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GCAGTAACGTGATGAGGTCTATCCATGGCGTTGGGGAGCTGATGACCCAGGTGGTGCTGCGGGGAGGAGGCTTCTTGCCCATGACTCCCATGGCTGCGGCCCCTGAAGGAAATGTGAAGCAGGCAGAGCCAGAGAAAGAGGACATCATGGTCATGGACACCAAGTTGAAGATCATTGAAATACTCCAG
Seq A exon
TTTATTTTGAATGTGAGATTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGAGAGTTTGATGAAAGCAATTCCCAGTCATCAGAAACATCCTCCGGAAACAGCAGCCAGGAAGGGCCAAGTAATGTGCCAG
Seq C2 exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCGGAAGGCATCTTTGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.465 C2=0.369
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAACGTGATGAGGTCTATCC
R:
TTCCTCCAAAGATGCCTTCCG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: