DreEX6092750 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35671901-35672864:-
Coord C1 exon
chr11:35672674-35672864
Coord A exon
chr11:35672047-35672188
Coord C2 exon
chr11:35671901-35671952
Length
142 bp
Sequences
Splice sites
3' ss Seq
ATGTCTCTCTTGTTATTCAGTTC
3' ss Score
8.18
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GTAGTAATGTAATGAAGTCCATTCATGGTGTTGGTGAGCTGATGACTCAGGTGGTGCTGAGAGGAGGCGGATTCTTACCCACAACCCCTACAACACCTCCAGATGGAGATGTAGTGAAGACCCAGACAGAACCAGAGAAAGAAGACATTCTGGTGATGGATACCAAGCTAAAAATCATAGAGATATTACAG
Seq A exon
TTCATTCTGAATGTTCGGCTGGACTACAGGATCTCCTGCTTGCTGTGCATCTTCAAACGAGAGTTTGACGAAAGCAACACACAAACAGATACAGCACCTGCTCCAAATGCAGACGGCCCCAACAGTATCCCAAATATTCCAG
Seq C2 exon
CTCTGGACTTTGAGAACATTGAAGAGCAAGCAGAAGGAATTTTTGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=0.458 C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGGTGTTGGTGAGCTGA
R:
CACCAAAAATTCCTTCTGCTTGCT
Band lengths:
218-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]