Special

GgaEX0012004 @ galGal4

Exon Skipping

Gene
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18445189-18447629:+
Coord C1 exon
chr12:18445189-18445376
Coord A exon
chr12:18446603-18446741
Coord C2 exon
chr12:18447575-18447629
Length
139 bp
Sequences
Splice sites
3' ss Seq
TACTACTTCTGTATCGTCAGTTC
3' ss Score
4.22
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
Seq A exon
TTCATTTTGAATGTGAGATTGGACTACAGAATCTCCTGCCTACTTTGTATATTTAAACACGAATTTGATGAAAGCAACGCCCAGATGTCTGAGTCACCCACTGGAAGCAGTAGTCAAGAAATGCCAGCAAATGTACCAG
Seq C2 exon
GAGCCCTAGACTTTGAACATATTGAAGAGCAAGCTGAAGGAATCTTTGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294_MULTIEX3-1/24=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.127 A=0.404 C2=0.316
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAATGTGATGAGATCAATCCA
R:
TTCCACCAAAGATTCCTTCAGCT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]