BtaEX6093950 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21783336-21787494:-
Coord C1 exon
chr22:21787307-21787494
Coord A exon
chr22:21784061-21784199
Coord C2 exon
chr22:21783336-21783394
Length
139 bp
Sequences
Splice sites
3' ss Seq
CATTTCCATTGAATCTCTAGTTT
3' ss Score
5.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAGTAACGTGATGCGGTCCATCCATGGGGTCGGAGAGCTGATGACCCAGGTGGTGCTCCGGGGAGGAGGCTTCCTGCCCATGACACCCACGGCCACCGCCCCTGAGGGCAACGTGAAGCAGGCCGAGCCGGAGAAGGAGGACATCATGGTGATGGACACCAAGCTGAAGATCATTGAAATACTCCAG
Seq A exon
TTTATTTTGAATGTGAGGTTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGGGAGTTTGATGAAAGCAATTCCCAGACTTCAGAAACATCCTCCGGAAACAGCAGCCAAGAAGGACCAAGTAATGTGCCAG
Seq C2 exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCTGAGGGCATCTTCGGAGGAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'23-24,'23-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.468 C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAACGTGATGCGGTCC
R:
TTCCTCCGAAGATGCCCTCAG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]