Special

BtaEX6093950 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21783336-21787494:-
Coord C1 exon
chr22:21787307-21787494
Coord A exon
chr22:21784061-21784199
Coord C2 exon
chr22:21783336-21783394
Length
139 bp
Sequences
Splice sites
3' ss Seq
CATTTCCATTGAATCTCTAGTTT
3' ss Score
5.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCAGTAACGTGATGCGGTCCATCCATGGGGTCGGAGAGCTGATGACCCAGGTGGTGCTCCGGGGAGGAGGCTTCCTGCCCATGACACCCACGGCCACCGCCCCTGAGGGCAACGTGAAGCAGGCCGAGCCGGAGAAGGAGGACATCATGGTGATGGACACCAAGCTGAAGATCATTGAAATACTCCAG
Seq A exon
TTTATTTTGAATGTGAGGTTGGATTATAGGATCTCCTGCCTCCTGTGTATATTTAAGCGGGAGTTTGATGAAAGCAATTCCCAGACTTCAGAAACATCCTCCGGAAACAGCAGCCAAGAAGGACCAAGTAATGTGCCAG
Seq C2 exon
GTGCTCTTGACTTTGAACACATTGAAGAACAAGCTGAGGGCATCTTCGGAGGAAGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'23-24,'23-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.238 A=0.468 C2=0.400
Domain overlap (PFAM):

C1:
NO
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTAACGTGATGCGGTCC
R:
TTCCTCCGAAGATGCCCTCAG
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]