GgaEX0012004 @ galGal3
Exon Skipping
Gene
ENSGALG00000008294 | Q9DEX2_CHICK
Description
NA
Coordinates
chr12:19088825-19091265:+
Coord C1 exon
chr12:19088825-19089012
Coord A exon
chr12:19090239-19090377
Coord C2 exon
chr12:19091211-19091265
Length
139 bp
Sequences
Splice sites
3' ss Seq
TACTACTTCTGTATCGTCAGTTC
3' ss Score
4.22
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGAGCAATGTGATGAGATCAATCCATGGAGTCGGGGAGCTGATGACCCAGGTGGTGCTGAGAGGTGGGGGGTTCTTGCCCATGACCCCGCTTGCTGCTGCTCCTGAGGGCAATGTCAAGCAGACTGAGCCGGAGAAGGAGGACATCCTGGTGATGGATACGAAGCTGAAGATCATTGAAATACTTCAG
Seq A exon
TTCATTTTGAATGTGAGATTGGACTACAGAATCTCCTGCCTACTTTGTATATTTAAACACGAATTTGATGAAAGCAACGCCCAGATGTCTGAGTCACCCACTGGAAGCAGTAGTCAAGAAATGCCAGCAAATGTACCAG
Seq C2 exon
GAGCCCTAGACTTTGAACATATTGAAGAGCAAGCTGAAGGAATCTTTGGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'25-28,'25-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=0.404 C2=0.316
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO

Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCAATGTGATGAGATCAATCCA
R:
TTCCACCAAAGATTCCTTCAGCT
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]