MmuEX6006022 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108326756-108328297:+
Coord C1 exon
chr6:108326756-108326855
Coord A exon
chr6:108327679-108327839
Coord C2 exon
chr6:108328156-108328297
Length
161 bp
Sequences
Splice sites
3' ss Seq
CCAACTCCCTTGCCTTTTAGATT
3' ss Score
9.56
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACTCCTATGTCCGTCTCAGACACCTGTGCACCAACACCTGGGTACACAGCACAAACATCCCCATCGACAAGGAAGAGGAGAAGCCTGTGATGCTGAAA
Seq A exon
ATTGGTACCTCTCCCCTGAAGGAGGACAAGGAAGCATTTGCCATAGTTCCTGTTTCCCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACAATCACCCAGAATGAGAGAAG
Seq C2 exon
GTCTGTCACGAAGCTTTTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACTAACTCTGGCCAAGACGTGCTTGAAGTTGTCTTCTCTAAGCCCAATCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'17-17,'17-16,18-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.199 A=0.037 C2=0.021
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.3=100)
A:
PF0281514=MIR=PD(7.4=27.8)
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCCTATGTCCGTCTCAGAC
R:
CTGCTTGAGAATATTCTGTTCCCTCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: