GgaEX1030851 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18436226-18437449:+
Coord C1 exon
chr12:18436226-18436325
Coord A exon
chr12:18436441-18436601
Coord C2 exon
chr12:18437308-18437449
Length
161 bp
Sequences
Splice sites
3' ss Seq
GCAACTTCTTTGGGTTTTAGATT
3' ss Score
7.13
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAACTCTTATGTCAGACTTAGACACCTTTGCACTAACACCTGGGTTCATAGTACAAATATCCCTATTGATAAAGAAGAAGAGAAACCTGTGATGCTTAAG
Seq A exon
ATTGGTACTTCTCCAGTAAAAGAGGACAAAGAAGCTTTTGCTATAGTACCAGTTTCTCCTGCAGAGGTTCGGGACTTGGACTTTGCAAACGATGCAAGTAAGGTCTTAGGTTCCATTGCTGGCAAACTGGAAAAGGGAACAATAACCCAGAATGAAAGACG
Seq C2 exon
ATCTGTTACCAAATTGTTGGAGGATTTGGTCTACTTTGTTACTGGTGGAACTAATTCTGGGCAAGACGTCCTTGAAGTGGTATTTTCTAAACCTAATAGAGAACGGCAAAAACTGATGAGAGAACAGAATATTCTAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'17-23,'17-22,18-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=0.111 C2=0.083
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.3=100)
A:
PF0281514=MIR=PD(7.4=27.8)
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCTTATGTCAGACTTAGACACC
R:
CTGCTTTAGAATATTCTGTTCTCTCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]