BtaEX6093940 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21800963-21803382:-
Coord C1 exon
chr22:21803283-21803382
Coord A exon
chr22:21801776-21801936
Coord C2 exon
chr22:21800963-21801104
Length
161 bp
Sequences
Splice sites
3' ss Seq
AAACCCATCTTTCATTTCAGATT
3' ss Score
8.87
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AAACTCCTATGTCCGGCTCCGACACCTGTGTACAAATACCTGGGTTCACAGCACAAACATCCCCATTGACAAGGAAGAAGAAAAACCCGTGATGCTGAAA
Seq A exon
ATTGGCACTTCTCCCGTGAAGGAGGACAAGGAAGCCTTTGCCATAGTGCCAGTCTCTCCTGCTGAGGTTCGGGATCTGGACTTTGCCAATGACGCCAGCAAGGTGCTGGGCTCCATAGCGGGCAAGTTGGAGAAGGGCACCATCACCCAGAATGAAAGAAG
Seq C2 exon
ATCTGTAACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACTGGCGGAACCAATTCTGGTCAAGATGTTCTTGAAGTGGTCTTCTCCAAGCCCAACAGAGAGCGTCAGAAGCTCATGAGAGAACAGAATATTCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.056 C2=0.021
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.3=100)
A:
PF0281514=MIR=PD(7.4=27.8)
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACTCCTATGTCCGGCTCCG
R:
AGAATATTCTGTTCTCTCATGAGCT
Band lengths:
235-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]