RnoEX0045385 @ rn6
Exon Skipping
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140409750-140411537:+
Coord C1 exon
chr4:140409750-140409849
Coord A exon
chr4:140410897-140411036
Coord C2 exon
chr4:140411396-140411537
Length
140 bp
Sequences
Splice sites
3' ss Seq
TTGGTACCTCTCCCCTGAAGGAG
3' ss Score
5.04
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACTCCTATGTCCGGCTCAGACACCTGTGTACAAACACCTGGGTTCACAGCACAAACATCCCCATTGACAAGGAAGAGGAAAAACCTGTCATGCTGAAG
Seq A exon
GAGGACAAGGAAGCTTTTGCCATAGTCCCCGTTTCTCCTGCTGAGGTTCGGGACCTGGACTTTGCCAATGATGCCAGCAAGGTGCTGGGCTCCATCGCTGGGAAGTTGGAAAAGGGCACCATCACCCAGAATGAGAGAAG
Seq C2 exon
GTCTGTCACCAAGCTGCTGGAAGACTTGGTTTACTTTGTCACGGGTGGAACGAACTCTGGCCAAGACGTGCTTGAAGTAGTCTTCTCTAAGCCCAACCGAGAGCGGCAGAAGCTGATGAGGGAACAGAATATTCTCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104-'28-25,'28-24,29-25
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.037 C2=0.021
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(16.3=100)
A:
PF0281514=MIR=PD(7.4=27.8)
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCCTATGTCCGGCTCAG
R:
CTGCTTGAGAATATTCTGTTCCCTCA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]