DreEX6092743 @ danRer10
Exon Skipping
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35682572-35685279:-
Coord C1 exon
chr11:35685180-35685279
Coord A exon
chr11:35683289-35683449
Coord C2 exon
chr11:35682572-35682713
Length
161 bp
Sequences
Splice sites
3' ss Seq
TACTGTGTTTTGTGCTTCAGATC
3' ss Score
9.83
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GAACTCGTATGTGAGATTGAGGCACTTGTGCACCAACACATGGGTCCACAGCACCAACAACCCCATTGACAAAGAGGAGGAGAAGCCGGTTATGCTGCGT
Seq A exon
ATCGGCACGTCTGCCGTCAAAGAAGATAAAGAGGCCTTCGCCATTGTGCCAGTTCCTCCTGCAGAGGTGAGGGATCTGGACTTTGCTAATGATGCCAGTAAAGTGTTGGCATCCATCGCTGGCAAGCTAGAGAAGGGCACAATCACCCAGAATGAAAGAAG
Seq C2 exon
GTTTGTCACTAAGCTGCTGGAGGATCTCGTGTTTTTTGTAGTGGACATTCCCAACAATGGACAGGATGTGTTGGAGATCATGGTCAATAAACCCAATCGTGAACGACAGAAACTCATGAGAGAGCAGAACATCCTAAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149-'16-15,'16-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.382 A=0.037 C2=0.083
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(15.6=100)
A:
PF0281514=MIR=PD(7.1=27.8)
C2:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTCGTATGTGAGATTGAGGCA
R:
TTGTTTTAGGATGTTCTGCTCTCTCA
Band lengths:
242-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]