MmuEX6006025 @ mm9
Exon Skipping
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108306385-108315337:+
Coord C1 exon
chr6:108306385-108306531
Coord A exon
chr6:108313604-108313699
Coord C2 exon
chr6:108315293-108315337
Length
96 bp
Sequences
Splice sites
3' ss Seq
AACCATCTTCGCTCTTGCAGGTA
3' ss Score
11.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTGATGTGGTGAGGCTCTTCCATGCCGAGCAAGAGAAGTTTCTCACCTGCGATGAGCACCGGAAGAAGCAGCATGTGTTCCTGAGGACCACCGGCAGGCAGTCAGCCACATCGGCCACCAGTTCCAAAGCCCTGTGGGAAGTGGAG
Seq A exon
GTAGTCCAGCACGACCCATGTCGGGGTGGAGCTGGGTACTGGAATAGCCTCTTCCGGTTCAAGCACCTGGCTACAGGGCATTACTTGGCTGCAGAG
Seq C2 exon
GTAGACCCTGACTTTGAGGAAGAATGCCTGGAGTTTCAGCCCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-'13-13,'13-12,14-13=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.8=100)
A:
PF0281514=MIR=FE(15.3=100)
C2:
PF0281514=MIR=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTCCATGCCGAGCAAGAG
R:
AACTCCAGGCATTCTTCCTCA
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: